Hello! Welcome back to our journey into the quantum foundations of organic chemistry.
In our last lesson, we derived the Pauli exclusion principle and Hund's rule from the fundamental antisymmetry requirement of electron wavefunctions. We now have a rigorous set of rules for how electrons populate atomic orbitals. Today, we take the crucial next step: combining atomic orbitals to describe bonding in molecules.
This lesson introduces Molecular Orbital (MO) Theory, a powerful framework that describes electrons as being delocalized over an entire molecule. By the end of our 60 minutes, you will be able to apply MO theory to construct and interpret the bonding and antibonding orbitals for diatomic molecules, providing a quantum mechanical answer to the fundamental question: "What is a chemical bond?"
1. From Atomic to Molecular Orbitals: The LCAO Approximation
The central idea of MO theory is that when atoms combine to form a molecule, their atomic orbitals (AOs) cease to exist and are replaced by a new set of molecular orbitals (MOs) that belong to the molecule as a whole.
While the Schrödinger equation for a molecule is too complex to solve exactly, we can construct excellent approximations for the MO wavefunctions. The most common method is the Linear Combination of Atomic Orbitals (LCAO). We express the unknown molecular orbital wavefunction () as a weighted sum of the constituent atomic orbital wavefunctions ().
For the simplest molecule, H₂, formed from two hydrogen atoms (A and B) with their respective 1s orbitals ( and ), the LCAO is:
Where and are weighting coefficients.
This combination of wavefunctions leads to two possible outcomes, which you may recall from wave physics.
Let's start with a conceptual overview. This video from MIT OpenCourseWare introduces how atomic orbitals combine via LCAO, leading to constructive and destructive interference.
Watch the segment from 4:03 to 6:05. Focus on how the superposition of atomic orbitals creates two distinct types of molecular orbitals.
As the video explained, the two combinations are:
- Bonding MO (Constructive Interference): The in-phase combination () increases the electron probability density in the region between the two nuclei. This increased density attracts both nuclei, holding them together. This orbital is lower in energy than the original AOs.
- Antibonding MO (Destructive Interference): The out-of-phase combination () results in a node—a region of zero electron density—between the nuclei. Without this "electronic glue," the nuclei repel each other. This orbital is higher in energy than the original AOs.

2. A Deeper Dive: The Energy of Molecular Orbitals
How do we determine the precise energies of these orbitals and the coefficients in the LCAO? For this, we turn to the Variational Principle, a cornerstone of quantum mechanics. It states that the energy calculated from any approximate wavefunction will always be greater than or equal to the true ground-state energy. Our goal is to find the coefficients that minimize the energy, giving us the best possible approximation.
The energy expectation value is given by:
For a homonuclear diatomic molecule like H₂, where , substituting and minimizing the energy with respect to the coefficients leads to a set of equations that can be solved. This process is mathematically elegant and reveals the deep structure of chemical bonding.
24. Molecular Orbital Theory I; Variational Principle and Matrix Mechanics
The following video provides a rigorous, graduate-level derivation for the H₂⁺ molecule. It introduces the key approximations and the matrix mechanics framework used in computational chemistry to solve this problem. This aligns with your interest in a 'hyper deep' treatment.
This is a dense but rewarding video. Please watch the following segments: Born-Oppenheimer Approximation (6:29 - 9:04): Understand why we can treat the nuclei as fixed points when solving for the electronic wavefunction. Simplifying the Hamiltonian (15:43 - 20:39): See how the problem is reduced to its essential kinetic and potential energy terms. The Variational Method (20:16 - 28:18): Focus on how a basis set of atomic orbitals is used to find the best possible energy and the importance of the overlap integral when orbitals are on different atoms. Matrix Mechanics (34:20 - 44:28): This is the core of the mathematical treatment. Pay attention to the setup of the Hamiltonian (H) and Overlap (S) matrices and the concept of the 'general eigenvalue equation' Hc = ESc.
The video's matrix approach is powerful. To see the algebraic solution step-by-step, we can solve the secular determinant derived from the variational principle.
A Rigorous Introduction to Molecular Orbital Theory
This document provides a rigorous walk-through of the derivation that the video summarizes. It explicitly defines the key integrals and solves the secular determinant.
Please read sections 5.1, 5.2, and 5.3 ('Introduction to Molecular Orbital Theory' through the derivation of the energy solutions). Focus on: The definitions of the Coulomb integral (\alpha), Resonance integral (eta), and Overlap integral (S). How the secular equations are formed by minimizing the energy. The final energy expressions for the bonding and antibonding orbitals: E_{ ext{bonding}} = rac{\alpha + eta}{1 + S} \quad ext{and} \quad E_{ ext{antibonding}} = rac{\alpha - eta}{1 - S}
A Key Insight from the Mathematics
Look closely at the energy expressions. Since the overlap integral is a small positive number (typically ~0.2-0.3), the denominator is smaller than . This means the energy of the antibonding orbital is raised by more than the energy of the bonding orbital is lowered.
This is a profound result: antibonding orbitals are more antibonding than bonding orbitals are bonding. This explains why Helium does not form a stable He₂ molecule. The two electrons in the bonding orbital provide stabilization, but the two electrons in the more-destabilizing antibonding orbital lead to a net increase in energy.
3. Constructing MO Diagrams for Diatomic Molecules
We can now use these principles to build MO diagrams for any diatomic molecule.
Rules for Construction:
- The total number of MOs equals the number of AOs combined.
- Orbitals are filled with electrons starting from the lowest energy level (Aufbau Principle).
- Each MO can hold a maximum of two electrons with opposite spins (Pauli Exclusion Principle).
- Electrons enter degenerate orbitals singly before pairing up (Hund's Rule).
We classify MOs by their symmetry:
- σ (sigma) orbitals: Formed from head-on overlap of s-s, s-p, or p-p orbitals. They are cylindrically symmetric about the internuclear axis.
- π (pi) orbitals: Formed from side-on overlap of p-p orbitals. They have a nodal plane that includes the internuclear axis. Pi orbitals always come in degenerate pairs (e.g., and ).
A useful metric is Bond Order, which predicts the net number of bonds:
Diatomics of the 2nd Period
For second-period elements (Li to Ne), we consider the combination of 2s and 2p atomic orbitals. The 2s AOs combine to form and MOs. The 2p AOs combine to form one and two degenerate bonding MOs, along with their antibonding counterparts ( and ).
A subtle but critical point is s-p mixing. The and orbitals have the same symmetry and can interact. This interaction pushes the down in energy and the up. The strength of this mixing depends on the energy gap between the 2s and 2p AOs.
- For O₂, F₂, Ne₂: The s-p gap is large, s-p mixing is weak. The orbital is lower in energy than the orbitals.
- For B₂, C₂, N₂: The s-p gap is small, s-p mixing is strong. The effect is large enough to push the orbital above the orbitals in energy.
This video provides a fantastic walkthrough of building the MO diagrams for the second-period diatomics, clearly explaining the orbital ordering and the consequences of s-p mixing.
Please watch from 53:24 to 1:04:34. This is the practical application of our theory. The s-p Mixing Rule (53:24 - 55:40): Pay close attention to the 'Pi first' rule for Z < 8. Oxygen (O₂) (55:40 - 1:01:50): Note the orbital order and how filling the electrons naturally leads to two unpaired electrons. This explains oxygen's paramagnetism, a major triumph of MO theory. Nitrogen (N₂) (1:01:50 - 1:04:34): Observe the different orbital order and how it leads to a bond order of 3, explaining its incredible stability.

Test your understanding!
Consider the cyanide ion, CN⁻. It is isoelectronic with N₂ (both have 10 valence electrons). However, it is a heteronuclear diatomic. How would the MO diagram for CN⁻ qualitatively differ from that of N₂? Consider the relative energies of the carbon and nitrogen atomic orbitals. Which atom's AOs would contribute more to the bonding MOs? Which would contribute more to the antibonding MOs?
Show answer
Because nitrogen is more electronegative than carbon, its atomic orbitals (2s and 2p) are lower in energy.
- Asymmetric Diagram: The MO diagram for CN⁻ will be asymmetric. The nitrogen AOs will be drawn at a lower energy level than the carbon AOs.
- Bonding MOs: The bonding MOs () will be lower in energy than in N₂ and will have larger coefficients from the lower-energy nitrogen AOs. They will be "more nitrogen-like".
- Antibonding MOs: The antibonding MOs () will be higher in energy and will have larger coefficients from the higher-energy carbon AOs. They will be "more carbon-like".
This unequal contribution is the quantum mechanical origin of bond polarity.
Conclusion
Today, we have built a quantum mechanical model of the chemical bond from first principles. We have seen that bonding is not just about "sharing electrons," but about the constructive interference of wavefunctions, leading to a new set of molecular orbitals with specific, calculable energies.
Key Takeaways:
- Molecular orbitals are formed by the Linear Combination of Atomic Orbitals (LCAO).
- In-phase combination gives a low-energy bonding MO, while out-of-phase combination gives a high-energy antibonding MO.
- The Variational Principle allows us to find the best approximation for the MO energies, revealing that antibonding orbitals are more destabilizing than bonding orbitals are stabilizing.
- MO theory successfully explains the bonding, stability (or lack thereof), and magnetic properties of diatomic molecules like N₂ and O₂.
- s-p mixing is a crucial effect that inverts the and energy levels for diatomics up to and including N₂.
Preview of the Next Lesson:
We now have a powerful and versatile tool for describing chemical bonds. In the next lesson, we will apply these MO concepts to simple organic molecules, constructing the molecular orbital energy diagrams for the and systems in ethene and ethyne. This will lay the groundwork for understanding the structure and reactivity of alkenes and alkynes.